CDS

Accession Number TCMCG057C15319
gbkey CDS
Protein Id XP_018483195.1
Location complement(join(2698913..2699175,2699261..2699393,2699493..2700059,2700155..2700379,2700562..2700853,2700936..2702665,2702752..2702817,2703044..2703169,2703394..2703780,2703874..2704055,2704140..2704276,2704356..2704816,2704937..2705365,2705456..2705705,2705817..2705957,2706041..2706221,2706350..2706689,2706841..2707078,2707174..2707360,2707649..2707962,2708045..2708119,2708192..2708390,2708499..2708702,2708968..2709141,2709226..2709332,2709493..2709566,2709656..2709734,2710171..2710373,2710798..2710923,2711086..2711154))
Gene LOC108854185
GeneID 108854185
Organism Raphanus sativus

Protein

Length 2652aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA344915
db_source XM_018627693.1
Definition PREDICTED: U3 small nucleolar RNA-associated protein 20-like [Raphanus sativus]

EGGNOG-MAPPER Annotation

COG_category V
Description Down-regulated in metastasis
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko03009        [VIEW IN KEGG]
KEGG_ko ko:K14772        [VIEW IN KEGG]
EC -
KEGG_Pathway -
GOs -

Sequence

CDS:  
ATGGCGACTCCAGCTGATGCTAGGGCTGTCAAGTCGCTCAACACTTCCGGGGGGCGTAAGAAATTCGTGTTCAAGAATCTCGCTCAGAAAGTTAATGAGATTGACATCAGCGGTTTCTTTAAGAGCCTGGAGAAGGTGAAGCCTGAGCCTTCGGAGGGCTCCTCGTTTTTCAGAGACTGCCTCGTAGAATTGAGGGAACTGAATACAGCAGAAGATTTCATTTCGTTCTACGAAGAGATGTTGCCATTTGTTCAGACTCTACCTTTGGTTATTGAGCAAAAAGAATTGATCTTCACAAAGCTTGTCTCTCGATTACAAATGAATGCAAGATTGTCCCTGGACGCCATTCTCAGGTTGATTGCTGCTTTATCAAGAGATCTATTGGAGGACTTTATCCCCTTCCTTCCACGGATCGTGAACTCCTTAGTGGCACTCCTAGAAAACGGTGCCAAGAAAGACGCGGATATTATCAAGCAGATATTCTCTTCATGGTGCGAGATATTAATGAATCTGCAGAAGTATCTCGTACGCGACATCGAAGGTATTCTCAGGGATACATTGGACTTGAGGTATCATCCCAAAGACTATATCAGTGAATTAATGTCAGAGTCTATGTCATTTTTGTTGAGGAATGCACGGAATGAGCAACTTGGAAAAGGGATCAACAGGATCCTTTCCGAAGTTGCAGATCCAGCTAAACAAGCTGGCGCAGTTGATTTACTTTATTATGCTATGAGAGGAACCTCTGGAAGTCTCCATTCAAAAGCCAAGAGAGTTTTGAGTTATTTGCTGAAAGATTCAACATTATCTTTTTGTGATAACGCTCCTCAAGGCGCTGGTACAGTCGTGGAAGTTGTTAGTTCTACTTTTCAGAGATTATGCGAGGATTTAGAAGGAGACAAATTAAATGTTATGTGGGAGTGCTTGATTCAGGAAATAAACGAATCGATCAAAATCAAAAACGCAGTTCATTTAAGCCGACTGCTGAGTGTGCTTACTGCAGCTGTTAGGATTCAGAAAGGTCTGAAGGTTCATGATTACCCATCTTTGATTCGACTTGTTGGCCTCATTGTGTCAACTTTTGTGGCTTCCTCTGAGACCATTGTAGAAGGGGATAACTTATCTGCTGTCATTGATGAAGTTCTGCAACTGATGTTATGCACATTAAACAGAGTCCATGATTTGGAAACTGTTGCTTCGCAATGGGCTCTCGTTTTTGCCGTGAAGAGTTCAAGTTTGTTGACGTTTTTGGGGGAGTTGCTGAACAAAGATCATTCGGTTGTGAAAGCCTTTACAAATAATATATTAAGTGCAATCAACAATATGATTTGGGATTCTTCTGAGGAAGTTATTCCTCTACTACTAACATTTTGCGAGAATCAACAAAAAAGTCACGACAGGGTGAACATCATAGATCAGCCACTTGAGAAAATTCATGAGTTTTTGGAAGAAAATATTAAGAAGGTTCGAAAGAACATAGAGAAGACTGGATTATCTCAAACTGATGATGCCGAGTTGGCTTCCATTTGGGGAGTTGTCAACTGTTATCCATTTTTCAAAGTGGATTCGTCATTGCTTATTTCCTTTAAGGAAACTGTCAGACAGAATTTGACAATGTCTAATGCAAACACGTCTAGTGTCCCAGAATTGATGTGGCAAAGCTTACTTGGTGCTACGTTGAGTTCATGTCACAAACTGCCGAGGAGAATCAACCACCACGATCTAGAGGAAGCATTGTCTATGGCTAAAGATTACAAGTCATGCTTACAAGTGTTGACCCCCGTGGCCGATTTCTTGGACTCAATGCACAGGCTTGCATTAGCTAATGATGACAGGTCTAAGCCGCAACCAGAACTTCAAGAAGAAAAGGCTAAAGAAGCTTTTGGCATATTTTCGGAAAACTTGCGCCACCCAAACAAATGCATCCGTCTTATGACTCTGAAGATTTTGTGCCATTTTGAAACGTTTTCGACCGACTCTTTTGGAGAGCAGCCTCCTAAGAAGAAAATGAAAACTGAGGATATCAAACAATCTTCTCGTAAAAGGAATGTTCTTGAGTTATTACGCTCAATCGAAGAGATTGTTCCGACAGTGAATACGGAGGGGGAGTTAATCGGAATGCTTTCTGAAATAAAAGGGCATCTCTCTGCTGGCAGGGTACATGCGGCATATGTGCAGCTATTATTGAATGGGTTGATGGGAATATTTCATATTAGTTACACTAAATTGTGGGTTCCAGCATCTGAGTGTCTTGGTGTTCTTCTGAGGAATCACACAGCAGCTGTGTGGAGTGATTTTGTTAGTTATTTGAACCAGTGCCAACTGAAATTTGAGACACTCGACAATCATAGTGAGATTGCGAACCAAAGCTTGGCAGACAAGCCTACTGATCTGATAGGCCGTTTCAATTTATTTCTCTCTCCGCCGTCTAATAGCACACTTACTGCAACCGTGGTTACTCAGTTGCTCCAGACCTTACAAAAAGTTCCCAATGTTGCTCAGTCCCATGCTTCTGAGATTCTCCCTCTGTTGCTGAAGTTTCTAGGATACAACACTGAAAATCCTATGAGTGTCGGATTATTCAATGCGCAAGTTTGTAAAGGAGAGGATTGGAGGAATGTTGTGAAACAATGGTTGACTTTACTGAAATTGATGAAAAATCCAAAGTCGTTTCAGTTTAGCGAATTTCTAAACAATGTTCTGCAGAATAGATTCCTGGACGATAATGATGCTGAATTACAAACCGTTGTTCTAGAGTGCCTTCTGTTGTGGAACGACTTCTTACTCCCACACCGCGAGCATTTGTTGAAACTTATCAAACCAGAGGAATTGAGAGAAGAACTCACGACCTCGAACATGTCCGTAGACATTGAAGAAGCTCACCGATCCCTTCTTTTCTCTCTTGAAATTCGCATCCTTGCGCCAAAAGTCAGGACATTAAAGAATTTGGCTTCCCGGAAGCATACAAGTATAAATCACAGGAAGGCAGTTCTTCGCTTCATAGCTGAGCGGGATGTTAATGACCTTGCCCTCTTTTTTGTATTGTTGATAAAGCCTTTGAACATCATATCAGAGGAAACAATGGACTTGTTCTGGAATTCAGGCAAAACTTCGCTGGAATATTTCCAAAAGGCGAATTTCTTGAAGGATTTCACTGGTGATACTATTTCGACATTGTCCAGGAATCAGAAATCTGGGTTTCTTCATGTCATCCAAGACATCCTTGAAGTCTTTGATGAACTCCGTGTCCGACCTTTTATAGACTTTTTGATGGGATGTGTTGTCCGACTAATGGTAAACTATACTCCAAGTACTAATGAAGAAAGTAGTGACAATGCTGCCTCATCAACCCCAGAGAACAAAGAGAATGTTTCAGTTCATCAAGACCAGGCTGGCACTGCTTTGAAGCAGTTTAAAGAGTTGAGATCCTTATGTCTGAAAATTATTGCTCATGTTCTTGATAAATACGAGGATTCTGAGCTTGGTTCCGAGTTCTGGGACCTCTTCTTTTCGGCAGTAAATCCGTTAATTAAGAATTTCAAGCAGGAGGGTTCTAGTAGTGAGAAAGCAAGTTCCCTGTTCTCATGCTTCTTGTCAATGAGTAGAAACCGCAATCTCGTGACCCTCTTATGTCGGGAAGAGTCTCTCATTCCAGACATTTGTTCGATTCTGACAGTCACCACGGCTTCAGACGCTATAAAGTCGTCTGCACTGAAGTTCATAGAGAATATGCTTTGTCTTGACAGTGAGTTGCACGAGGATGACAGTATGATCAAAGGCTTCTTAGATCCGTACATAGAAACACTGTTCAGCAGCTTGCATTCTCTTTTCATTGGGGATATTAACAAAAGGAAATCAGTCAAATATCATGGGGAAAGAGAGATTAGGATTCTTAAATTGTTGTCAAAGCACATGAGAGATCAGTCTTGTGTTATGAAGTATCTGGACGTCTTACTTTCTTTCTTGGATAAAAATGTGAAAAATTCTGATATCCGTCGTGAGGCTTTGCTAGCCATTCGGGACATCGTATCATTGCTTGGGACTGAGAGTACCACCAAAATTATAAACAAAATCTCTCCTCTACTTGTTGACGCTGATGTTGACGTTAGATTCTGCATTTGTGATCTTCTTGAGTCTCTTGCTAAAATCGACTTTTCTCTGGATGATGTGGCAAAGCGCATCCGAGATATGAATGCCATCTCAGCCATGGAAGTTGATGACCTTGACTATGAAAGGATAGTTAATTCTTATGTGGAGATTGACGCGGATTTCTTTACTAAATCCTCGAAGCAGCACACGATGATCATACTGTCACAGAGTTTATACAACTTATCATCGGAGTCAATTATGTTAAGGGGAAGCGCACATAAGCTCTTGTCATCTTTCATTGATTTCTCGGCCTCAATACTCTGCCAAGAGGCTTCAGCTCACTCTGGCGTTGCCAAAGAGGTCAAAATAGCTGATGCAAGCTGGACAGGAAAGCATACACTGTCCATTGTAGATTTTATCTTGAAACACATTACTGATGCAGTAAGCAAAGGAGGCAATATAGTAAAGGAATGGATTCTTTTGATACGTGAAATGGTGACAAAACTCCCAGATGCCGGAAATCTTGGTGCATTTAGACCTTTATGCTCTGAAGATGACAATATTGATTTTTTTAAATCCATAGTTCACATTCAGTCACACCGTAGAGCAAAGGCGATTTCACGTTTCGCAAAAGTGGTCGGAGATAGCAGCCTGCCTGAGGGAGTCGTGAGAAAACTTTTTGTGGCTGTCTTTTTCCACATGTTGCTCGATGGACAAGATGAAAAAGAAAATAATGTCCGTAATGCATGCACAGAGGCCCTTGCATCTGTATCTGCACATATGAGTTGGAAGTCGTACTATGCTCTATTGAATCGGTGTTTCCGTGAGATGCACAATCATACCAAAAAGGGAAAGCTTCTGCTGCGGCTTATCTGCTTGATTTTGGGTAAATTTCATTTTAAAGAAGATGGTGGTTACAGGCAGGAGGAGATTGATGAGATTCACAAATGCCTTCGAACTGTTTTTGGAAAGATGCAGAAGTTGATGGATTCTGATTCTGACAATGTTAATGTTAACAGCAGTGTGGCTGCACTTAAGGTTCTAAAGCTGCTCCCCAAAGACGTAATGGACGATTATCTGTCCCCTATAATTAAGAGGATTACAACTTTTACGAAGAACCGGTTGGAGAGCACACGTGATGAAGCCAGATCTGCTCTGGTTGCTTGTTTGAAGGAATTGGGGCTTGAGTACTTGCAGGTTGTCATCAAAAGTTTACGTGATATCCTGAAACGAGGATCTGAGTTGCACGTGCTGGGATACACTGTCCATTCTATCTTATCGAAGTGCTTGTCCAAACCTACGTGCGGGAAGTTGGATCATTGCTTGGATGATCTCCTGGCCGTGGTTGAAACCGACATTTTTGGAGTGGTTGCTGAACAGAAAGATGTGGATAACTTCAAATACAAAATGAAAGAGACACGAAACCGCATGTCATTCGAGACTCTGAAGTTGATTTCTGAAAATGTAACGTTCAGAGAACATGCATTGAAATTACTGTCTCCGGTCACTGCTCAGCTGCGGCGGCATCTAACTCCAAAGATAAAACCAGATCTGGTGAAGATGTTACAACACATCGCAGTTGGTATTGAAGGCAATCCATCTGTTGACCAGTTAGATCTTTTTGTTTTTATATATGGCCGTGTTGATGATGGTATTAACAACAGGAATGGTCTTGGAGATCATGGGTCTTCTCCACCTTCCAAAAAGAAGAGGAAATCAAGAGATGTACAAGAGACTGTTGGGTCTATTTCTGGTGCTAGGTCTTGTTCAGATCTTATAACAGTGTTTGCTCTGAACTTACTGCAAAATAGACTGAAGAATATTAAACTCCACAACACTGATAAAGAGCTGCTAGGGAAGTTAGATTCGTTTGTCAAACTACTTACTGAATGTTTGCATTCTAAGTATGAAGATATTGTGTCATCAGCCCTTAGATGTTTCACTTCATTAATATGGTTTCCACTGCCTTCCCTCATTTCTGGAGCAGATGAGTTGAAAACAGCATTGCTAACAATTGCTCAGTCTGCAGTGAATTCCAGCAGTTCTCTTGTGCAGTCATGCCTTAAGCTTTTAACAACGCTCCTCGGTAATAAAAACATAACTTTGTCACAGGAGCAGTTAAAGTTGGTGATTCAGTTCCCCATGTTTGTTGATCTGGAGTCCGATCCATCCTTTGTTAACCTTTCACTCCTCAAGGCCATTGTGAAACGAAACCTTGTGGTTCCAGAGATTTATGACATTGCACTTCAGGTTTCAGAGTTGTTGGTAAAAAGCCAGCTGGACTCAATCCAAAAGAAATGCAAAGAGATACTGTTACAGTTTTTAATCCACTACGCACTTTCTGAGAAACGTTTACAGCAACATTTGGAATTCCTGCTGCAAAATCTGAGGTATGAACATTCAACTGGAAGGGAAGCAGTCCTGGACATGCTTTATGCTCTTATCTTGAAATTCTCAGCAAAGGATCTCGGCAAGAAGTCATTTCTGGACCAACAGTCGGAAACAATGCTCGTTAAGCTTGCTCTGTGTTTGCCCACCGATACTGATCAAAAAGTGCTGTCCCGGATCGGTTCTGTGATAAAACTTCTGATAAGTAGCATCAGTGAAGGTCAAGTTGGTTCCATTATCTCTGTTTGTCTGTGTTGGTATAAGCAGCAGAGGCTACAGGCTGTCGCAGCGCAGGTGTTGGGATTTATAATTGACTCTAAGAAGAAATCATTTGGGAAGCATATCAAAAATACGTTGGAGGATGCCAAAGTGATAATGGAGTCTGCTCTCAGTGCTTCCAGCATGCATACTGTTGAGGAAGGCGTTATTCCCTTCTGGAAGGAAGCATACTACTCCCTGGTTATGATAGAGAAGATGGTCCGGGAATTTCCTAAGTTAGAAATTGAAAAAGATTTAGAGGATATTTGGAAAGTGGAATTTTTTCAGGATATTTGGAAAATGGTATTTAAGTTCTTGTTGCACCCACACACATGGTTAAGAAGTATATCCTGCCGGCTACTGAATTATTATTTCAAGGCATTGGCTGGGAGGAAAAGAGCAGAATCATCTCAGATAGTGGTATCTGATTCTCTTCTTGAGAACCCAAGTAGCTTGTTCTCGGTAACTGTTTCTCTTTGCTCCCAGTTAAAGGATCTACCCACCATAGGGGATGTCAACGTCGATCTCTTCGTTGAAAATATAGCTTTTGCGGTCTCGAGTCTTCATTCCCTGATTGGACATTCTGTTCAAGCAACAGACAACGGGTTCTGGTCGAGTCTTGGCGAGGATGAGCAAGTGGAGTTCCTAAAAGCCTTTGAAGTGCTTGATTCAGGGAAAGGAAGGTCTACTTTTCTGTCTCTTACCTCAGGCAAACGTACCGAGAACGGCGAGGAGGATGGTGATGCTGCGAGTGGTGTGAGGAATGTATTGATCGGAAGCTTGCTCAAGAGACTGGGGAAGCTTGCTCTTGATACGGAGTCTGTTCAGATGAAGATTGTGTTCAACGTCTACAAAGCATTCACCTCACAACTGAGTCAAGAAGAATGTCGTTTATATGCCTACAAGATTCTGTTTCCACTATACAAAGTCTGCGAAGGTTTCACAGGAAAGATCATCTCAGATGAGTCTAAACAACTAGCGGAAGAGGTACGCGACAGAATAAGAGACAATACCTTGGGCAACCAACTCTTTGTGGAGGTTTACAGCGAGATAAGGAAGAGTTTGAGGAACAAGAGGGAGAAGAGAAAGCGAGAAGAAAAGACAATGGCAGTGGTGAATCCGGAGAGAAACGCAAAGAGGAAACTGAGGTTAGCTTCGAAGAATAAAGCCAACAAGAGGAGGAGGATGACGAGCATGAAGTTATCTCGATGGGCAAGCTCTTGA
Protein:  
MATPADARAVKSLNTSGGRKKFVFKNLAQKVNEIDISGFFKSLEKVKPEPSEGSSFFRDCLVELRELNTAEDFISFYEEMLPFVQTLPLVIEQKELIFTKLVSRLQMNARLSLDAILRLIAALSRDLLEDFIPFLPRIVNSLVALLENGAKKDADIIKQIFSSWCEILMNLQKYLVRDIEGILRDTLDLRYHPKDYISELMSESMSFLLRNARNEQLGKGINRILSEVADPAKQAGAVDLLYYAMRGTSGSLHSKAKRVLSYLLKDSTLSFCDNAPQGAGTVVEVVSSTFQRLCEDLEGDKLNVMWECLIQEINESIKIKNAVHLSRLLSVLTAAVRIQKGLKVHDYPSLIRLVGLIVSTFVASSETIVEGDNLSAVIDEVLQLMLCTLNRVHDLETVASQWALVFAVKSSSLLTFLGELLNKDHSVVKAFTNNILSAINNMIWDSSEEVIPLLLTFCENQQKSHDRVNIIDQPLEKIHEFLEENIKKVRKNIEKTGLSQTDDAELASIWGVVNCYPFFKVDSSLLISFKETVRQNLTMSNANTSSVPELMWQSLLGATLSSCHKLPRRINHHDLEEALSMAKDYKSCLQVLTPVADFLDSMHRLALANDDRSKPQPELQEEKAKEAFGIFSENLRHPNKCIRLMTLKILCHFETFSTDSFGEQPPKKKMKTEDIKQSSRKRNVLELLRSIEEIVPTVNTEGELIGMLSEIKGHLSAGRVHAAYVQLLLNGLMGIFHISYTKLWVPASECLGVLLRNHTAAVWSDFVSYLNQCQLKFETLDNHSEIANQSLADKPTDLIGRFNLFLSPPSNSTLTATVVTQLLQTLQKVPNVAQSHASEILPLLLKFLGYNTENPMSVGLFNAQVCKGEDWRNVVKQWLTLLKLMKNPKSFQFSEFLNNVLQNRFLDDNDAELQTVVLECLLLWNDFLLPHREHLLKLIKPEELREELTTSNMSVDIEEAHRSLLFSLEIRILAPKVRTLKNLASRKHTSINHRKAVLRFIAERDVNDLALFFVLLIKPLNIISEETMDLFWNSGKTSLEYFQKANFLKDFTGDTISTLSRNQKSGFLHVIQDILEVFDELRVRPFIDFLMGCVVRLMVNYTPSTNEESSDNAASSTPENKENVSVHQDQAGTALKQFKELRSLCLKIIAHVLDKYEDSELGSEFWDLFFSAVNPLIKNFKQEGSSSEKASSLFSCFLSMSRNRNLVTLLCREESLIPDICSILTVTTASDAIKSSALKFIENMLCLDSELHEDDSMIKGFLDPYIETLFSSLHSLFIGDINKRKSVKYHGEREIRILKLLSKHMRDQSCVMKYLDVLLSFLDKNVKNSDIRREALLAIRDIVSLLGTESTTKIINKISPLLVDADVDVRFCICDLLESLAKIDFSLDDVAKRIRDMNAISAMEVDDLDYERIVNSYVEIDADFFTKSSKQHTMIILSQSLYNLSSESIMLRGSAHKLLSSFIDFSASILCQEASAHSGVAKEVKIADASWTGKHTLSIVDFILKHITDAVSKGGNIVKEWILLIREMVTKLPDAGNLGAFRPLCSEDDNIDFFKSIVHIQSHRRAKAISRFAKVVGDSSLPEGVVRKLFVAVFFHMLLDGQDEKENNVRNACTEALASVSAHMSWKSYYALLNRCFREMHNHTKKGKLLLRLICLILGKFHFKEDGGYRQEEIDEIHKCLRTVFGKMQKLMDSDSDNVNVNSSVAALKVLKLLPKDVMDDYLSPIIKRITTFTKNRLESTRDEARSALVACLKELGLEYLQVVIKSLRDILKRGSELHVLGYTVHSILSKCLSKPTCGKLDHCLDDLLAVVETDIFGVVAEQKDVDNFKYKMKETRNRMSFETLKLISENVTFREHALKLLSPVTAQLRRHLTPKIKPDLVKMLQHIAVGIEGNPSVDQLDLFVFIYGRVDDGINNRNGLGDHGSSPPSKKKRKSRDVQETVGSISGARSCSDLITVFALNLLQNRLKNIKLHNTDKELLGKLDSFVKLLTECLHSKYEDIVSSALRCFTSLIWFPLPSLISGADELKTALLTIAQSAVNSSSSLVQSCLKLLTTLLGNKNITLSQEQLKLVIQFPMFVDLESDPSFVNLSLLKAIVKRNLVVPEIYDIALQVSELLVKSQLDSIQKKCKEILLQFLIHYALSEKRLQQHLEFLLQNLRYEHSTGREAVLDMLYALILKFSAKDLGKKSFLDQQSETMLVKLALCLPTDTDQKVLSRIGSVIKLLISSISEGQVGSIISVCLCWYKQQRLQAVAAQVLGFIIDSKKKSFGKHIKNTLEDAKVIMESALSASSMHTVEEGVIPFWKEAYYSLVMIEKMVREFPKLEIEKDLEDIWKVEFFQDIWKMVFKFLLHPHTWLRSISCRLLNYYFKALAGRKRAESSQIVVSDSLLENPSSLFSVTVSLCSQLKDLPTIGDVNVDLFVENIAFAVSSLHSLIGHSVQATDNGFWSSLGEDEQVEFLKAFEVLDSGKGRSTFLSLTSGKRTENGEEDGDAASGVRNVLIGSLLKRLGKLALDTESVQMKIVFNVYKAFTSQLSQEECRLYAYKILFPLYKVCEGFTGKIISDESKQLAEEVRDRIRDNTLGNQLFVEVYSEIRKSLRNKREKRKREEKTMAVVNPERNAKRKLRLASKNKANKRRRMTSMKLSRWASS